<abstract xmlns="http://www.w3.org/1999/xhtml">Spatial environmental heterogeneity are well known characteristics of field forest genetic trials, even in small experiments (&lt;1ha) established under seemingly uniform conditions and intensive site management. In such trials, it is commonly assumed that any simple type of experimental field design based on randomization theory, as a completely randomized design (CRD), should account for any of the minor site variability. However, most published results indicate that in these types of trials harbor a large component of the spatial variation which commonly resides in the error term. Here we applied a two-dimensional smoothed surface in an individual-tree mixed model, using tensor product of linear, quadratic and cubic B-spline bases with different and equal number of knots for rows and columns, to account for the environmental spatial variability in two relatively small (i.e., 576 m2 and 5,705 m2) forest genetic trials, with large multiple-tree contiguous plot configurations. In general, models accounting for site variability with a two-dimensional surface displayed a lower value of the deviance information criterion than the classical RCD. Linear B-spline bases may yield a reasonable description of the environmental variability, when a relatively small amount of information available. The mixed models fitting a smoothed surface resulted in a reduction in the posterior means of the error variance (σ2e), an increase in the posterior means of the additive genetic variance (σ2a) and heritability (<italic>h</italic>2HT), and an increase of 16.05% and 46.03% (for parents) or 11.86% and 44.68% (for offspring) in the accuracy of breeding values, respectively in the two experiments.</abstract>

Spatial environmental heterogeneity are well known characteristics of field forest genetic trials, even in small experiments (<1ha) established under seemingly uniform conditions and intensive site management. In such trials, it is commonly assumed that any simple type of experimental field design based on randomization theory, as a completely randomized design (CRD), should account for any of the minor site variability. However, most published results indicate that in these types of trials harbor a large component of the spatial variation which commonly resides in the error term. Here we applied a two-dimensional smoothed surface in an individual-tree mixed model, using tensor product of linear, quadratic and cubic B-spline bases with different and equal number of knots for rows and columns, to account for the environmental spatial variability in two relatively small (i.e., 576 m2 and 5,705 m2) forest genetic trials, with large multiple-tree contiguous plot configurations. In general, models accounting for site variability with a two-dimensional surface displayed a lower value of the deviance information criterion than the classical RCD. Linear B-spline bases may yield a reasonable description of the environmental variability, when a relatively small amount of information available. The mixed models fitting a smoothed surface resulted in a reduction in the posterior means of the error variance (σ2e), an increase in the posterior means of the additive genetic variance (σ2a) and heritability (h2HT), and an increase of 16.05% and 46.03% (for parents) or 11.86% and 44.68% (for offspring) in the accuracy of breeding values, respectively in the two experiments.

Two-dimensional penalized splines via Gibbs sampling to account for spatial variability in forest genetic trials with small amount of information available

Instituto Nacional de Tecnología Agropecuaria (INTA)

Department of Dendrology and Forest Tree Breeding, Faculty of Forestry and Wood Sciences

Department of Forest Sciences, Faculty of Forestry

Silvae Genetica

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Spatial environmental heterogeneity are well known characteristics of field forest genetic trials, even in small experiments (<1ha) established under seemingly...

Two-dimensional penalized splines via Gibbs sampling to account for spatial variability in forest genetic trials with small amount of information available

Publié en ligne: 05 août 2017

Pages: 25 - 35

Reçu: 14 janv. 2010

DOI: https://doi.org/10.1515/sg-2011-0004

Mots clés
genetics trials, spatial variability, tensor product of B-spline, error variance, genetic parameters, accuracy

© 2011 E. P. Cappa et al., published by De Gruyter Open

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Two-dimensional penalized splines via Gibbs sampling to account for spatial variability in forest genetic trials with small amount of information available

Publié en ligne: 05 août 2017

Pages: 25 - 35

Reçu: 14 janv. 2010

DOI: https://doi.org/10.1515/sg-2011-0004

Mots clésgenetics trials, spatial variability, tensor product of B-spline, error variance, genetic parameters, accuracy

© 2011 E. P. Cappa et al., published by De Gruyter Open

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Mots clés
genetics trials, spatial variability, tensor product of B-spline, error variance, genetic parameters, accuracy